Buildfile: /home/ubuntu/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 03:43:15,198 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found logback-core version 1.5.37
   [testng] 03:43:15,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3d1cfad4 - No custom configurators were discovered as a service.
   [testng] 03:43:15,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3d1cfad4 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:43:15,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3d1cfad4 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:43:15,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:43:15,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:43:15,210 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/ubuntu/bioformats/components/test-suite/logback.xml]
   [testng] 03:43:15,410 |-INFO in ch.qos.logback.classic.model.processor.ConfigurationModelHandlerFull - Scan attribute not set or set to unrecognized value.
   [testng] 03:43:15,415 |-INFO in ch.qos.logback.core.model.processor.ModelInterpretationContext@41e1e210 - value "logfile-threadName_IS_UNDEFINED" substituted for "logfile-${threadName}"
   [testng] 03:43:15,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:43:15,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:43:15,470 |-INFO in ch.qos.logback.core.ConsoleAppender[stdout] - NOTE: Writing to the console can be slow. Try to avoid logging to the 
   [testng] 03:43:15,470 |-INFO in ch.qos.logback.core.ConsoleAppender[stdout] - console in production environments, especially in high volume systems.
   [testng] 03:43:15,470 |-INFO in ch.qos.logback.core.ConsoleAppender[stdout] - See also https://logback.qos.ch/codes.html#slowConsole
   [testng] 03:43:15,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:43:15,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:43:15,483 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:43:15,484 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:43:15,484 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:43:15,485 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:43:15,485 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6be968ce - End of configuration.
   [testng] 03:43:15,486 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4a003cbe - Registering current configuration as safe fallback point
   [testng] 03:43:15,505 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3d1cfad4 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2026-10-01 03:43:15,518] [main] java.version = 21.0.12.1
   [testng] 03:43:15,522 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@7b4c50bc - value "logfile-main" substituted for "logfile-${threadName}"
   [testng] 03:43:15,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:43:15,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:43:15,524 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@7b4c50bc - value "target/bio-formats-test-main.log" substituted for "target/bio-formats-test-${threadName}.log"
   [testng] 03:43:15,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2026-10-01_03-43-15.log]
   [testng] 03:43:15,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fce8fd9 - End of configuration.
   [testng] [2026-10-01 03:43:15,576] [main] testng.directory = /mnt/bioformats-data/curated/ecat7/
   [testng] [2026-10-01 03:43:15,576] [main] testng.configDirectory = /home/ubuntu/data_repo_config/curated/ecat7
   [testng] [2026-10-01 03:43:15,586] [main] testng.multiplier = 1.0
   [testng] [2026-10-01 03:43:15,586] [main] testng.in-memory = false
   [testng] [2026-10-01 03:43:15,587] [main] testng.allow-missing = false
   [testng] [2026-10-01 03:43:15,587] [main] user.language = en
   [testng] [2026-10-01 03:43:15,587] [main] user.country = ${user.country}
   [testng] [2026-10-01 03:43:15,587] [main] Maximum heap size = 12288 MB
   [testng] Scanning for files...
   [testng] [2026-10-01 03:43:16,120] [main] ----------------------------------------
   [testng] [2026-10-01 03:43:16,120] [main] Total files: 9
   [testng] [2026-10-01 03:43:16,120] [main] Scan time: 0.533 s (59 ms/file)
   [testng] [2026-10-01 03:43:16,121] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 8 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2026-10-01 03:43:17,057] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/ecat7/mark/motiontracker.mnc: 
   [testng] 03:43:17,057 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@7554a520 - value "logfile-pool-1-thread-1" substituted for "logfile-${threadName}"
   [testng] 03:43:17,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:43:17,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:43:17,060 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@7554a520 - value "target/bio-formats-test-pool-1-thread-1.log" substituted for "target/bio-formats-test-${threadName}.log"
   [testng] 03:43:17,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2026-10-01_03-43-17.log]
   [testng] 03:43:17,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20627d7e - End of configuration.
   [testng] [2026-10-01 03:43:17,208] [pool-1-thread-7] Initializing /mnt/bioformats-data/curated/ecat7/mark/FP609_1_112007_bl2.v: 
   [testng] 03:43:17,209 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@eeee5cf - value "logfile-pool-1-thread-7" substituted for "logfile-${threadName}"
   [testng] 03:43:17,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:43:17,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:43:17,213 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@eeee5cf - value "target/bio-formats-test-pool-1-thread-7.log" substituted for "target/bio-formats-test-${threadName}.log"
   [testng] 03:43:17,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2026-10-01_03-43-17.log]
   [testng] 03:43:17,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd3eff4 - End of configuration.
   [testng] [2026-10-01 03:43:17,233] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/ecat7/torsten/ecat7-ver70-testfile.v: 
   [testng] 03:43:17,233 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@7847dda7 - value "logfile-pool-1-thread-8" substituted for "logfile-${threadName}"
   [testng] 03:43:17,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:43:17,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:43:17,233 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@7847dda7 - value "target/bio-formats-test-pool-1-thread-8.log" substituted for "target/bio-formats-test-${threadName}.log"
   [testng] 03:43:17,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2026-10-01_03-43-17.log]
   [testng] 03:43:17,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@397ad79c - End of configuration.
   [testng] [2026-10-01 03:43:17,258] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/ecat7/mark/FP609_1_112007_bl1.v: 
   [testng] 03:43:17,258 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@4e61efa5 - value "logfile-pool-1-thread-6" substituted for "logfile-${threadName}"
   [testng] 03:43:17,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:43:17,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:43:17,259 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@4e61efa5 - value "target/bio-formats-test-pool-1-thread-6.log" substituted for "target/bio-formats-test-${threadName}.log"
   [testng] 03:43:17,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2026-10-01_03-43-17.log]
   [testng] 03:43:17,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f5ce59e - End of configuration.
   [testng] [2026-10-01 03:43:17,283] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/ecat7/mark/FP609_2_112107_bl2.v: 
   [testng] 03:43:17,283 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@60e80901 - value "logfile-pool-1-thread-5" substituted for "logfile-${threadName}"
   [testng] 03:43:17,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:43:17,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:43:17,283 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@60e80901 - value "target/bio-formats-test-pool-1-thread-5.log" substituted for "target/bio-formats-test-${threadName}.log"
   [testng] 03:43:17,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2026-10-01_03-43-17.log]
   [testng] 03:43:17,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21d5033a - End of configuration.
   [testng] [2026-10-01 03:43:17,306] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/ecat7/mark/FP609_2_112107_bl1.v: 
   [testng] 03:43:17,307 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@4c09d6c9 - value "logfile-pool-1-thread-4" substituted for "logfile-${threadName}"
   [testng] 03:43:17,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:43:17,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:43:17,312 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@4c09d6c9 - value "target/bio-formats-test-pool-1-thread-4.log" substituted for "target/bio-formats-test-${threadName}.log"
   [testng] 03:43:17,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2026-10-01_03-43-17.log]
   [testng] 03:43:17,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d34dcf2 - End of configuration.
   [testng] [2026-10-01 03:43:17,353] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/ecat7/public/torsten/gradient-512x512x10.v: 
   [testng] 03:43:17,353 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@6b692d73 - value "logfile-pool-1-thread-3" substituted for "logfile-${threadName}"
   [testng] 03:43:17,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:43:17,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:43:17,354 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@6b692d73 - value "target/bio-formats-test-pool-1-thread-3.log" substituted for "target/bio-formats-test-${threadName}.log"
   [testng] 03:43:17,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2026-10-01_03-43-17.log]
   [testng] 03:43:17,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a542748 - End of configuration.
   [testng] [2026-10-01 03:43:17,374] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/ecat7/mark/MotionTracker_94_ac1_de3.v: 
   [testng] 03:43:17,375 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@32c85781 - value "logfile-pool-1-thread-2" substituted for "logfile-${threadName}"
   [testng] 03:43:17,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:43:17,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:43:17,375 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@32c85781 - value "target/bio-formats-test-pool-1-thread-2.log" substituted for "target/bio-formats-test-${threadName}.log"
   [testng] 03:43:17,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2026-10-01_03-43-17.log]
   [testng] 03:43:17,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73f55dba - End of configuration.
   [testng] [2026-10-01 03:43:18,436] [pool-1-thread-1] 	PhysicalSizeZ: FAILED (Series 0 (expected null, actual ome.units.quantity.Length: value[2.4250000715255737], unit[mm] stored as java.lang.Double))
   [testng] [2026-10-01 03:43:18,456] [pool-1-thread-1] 	PlanePositions: FAILED (Z position series 0, plane 1 (expected -444.92000579833984, actual -442.49500572681427))
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 424, Failures: 2, Skips: 0
   [testng] ===============================================
   [testng] 
   [testng] The tests failed.