Buildfile: /home/ubuntu/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:14:36,294 |-INFO in ch.qos.logback.classic.model.processor.ConfigurationModelHandlerFull - Scan attribute not set or set to unrecognized value. [testng] 03:14:36,411 |-INFO in ch.qos.logback.core.model.processor.ModelInterpretationContext@1ba9117e - value "logfile-threadName_IS_UNDEFINED" substituted for "logfile-${threadName}" [testng] 03:14:36,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:14:36,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:14:36,620 |-INFO in ch.qos.logback.core.ConsoleAppender[stdout] - NOTE: Writing to the console can be slow. Try to avoid logging to the [testng] 03:14:36,621 |-INFO in ch.qos.logback.core.ConsoleAppender[stdout] - console in production environments, especially in high volume systems. [testng] 03:14:36,621 |-INFO in ch.qos.logback.core.ConsoleAppender[stdout] - See also https://logback.qos.ch/codes.html#slowConsole [testng] 03:14:36,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:14:36,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:14:36,658 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:14:36,658 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:14:36,667 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:14:36,669 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:14:36,669 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@17fc391b - End of configuration. [testng] 03:14:36,670 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@792b749c - Registering current configuration as safe fallback point [testng] 03:14:36,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d0d9fe7 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 926 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2026-07-06 03:14:36,724] [main] java.version = 21.0.11 [testng] 03:14:36,730 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@97e93f1 - value "logfile-main" substituted for "logfile-${threadName}" [testng] 03:14:36,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:14:36,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:36,734 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@97e93f1 - value "target/bio-formats-test-main.log" substituted for "target/bio-formats-test-${threadName}.log" [testng] 03:14:36,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2026-07-06_03-14-36.log] [testng] 03:14:36,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d6025c5 - End of configuration. [testng] [2026-07-06 03:14:36,888] [main] testng.directory = /mnt/bioformats-data/curated/nd2/ [testng] [2026-07-06 03:14:36,888] [main] testng.configDirectory = /home/ubuntu/data_repo_config/curated/nd2 [testng] [2026-07-06 03:14:36,931] [main] testng.multiplier = 1.0 [testng] [2026-07-06 03:14:36,932] [main] testng.in-memory = false [testng] [2026-07-06 03:14:36,933] [main] testng.allow-missing = false [testng] [2026-07-06 03:14:36,933] [main] user.language = en [testng] [2026-07-06 03:14:36,933] [main] user.country = ${user.country} [testng] [2026-07-06 03:14:36,933] [main] Maximum heap size = 12288 MB [testng] Scanning for files... [testng] [2026-07-06 03:15:50,909] [main] ---------------------------------------- [testng] [2026-07-06 03:15:50,909] [main] Total files: 318 [testng] [2026-07-06 03:15:50,909] [main] Scan time: 73.975 s (232 ms/file) [testng] [2026-07-06 03:15:50,910] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 279 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2026-07-06 03:29:31,334] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/nadya/flat.nd2: [testng] 03:29:31,335 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@2cfe17b8 - value "logfile-pool-1-thread-1" substituted for "logfile-${threadName}" [testng] 03:29:31,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:29:31,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:31,336 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@2cfe17b8 - value "target/bio-formats-test-pool-1-thread-1.log" substituted for "target/bio-formats-test-${threadName}.log" [testng] 03:29:31,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2026-07-06_03-29-31.log] [testng] 03:29:31,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f98c36b - End of configuration. [testng] [2026-07-06 03:29:31,464] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/weekend002.nd2: [testng] 03:29:31,465 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@4e9635dd - value "logfile-pool-1-thread-9" substituted for "logfile-${threadName}" [testng] 03:29:31,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:29:31,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:31,465 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@4e9635dd - value "target/bio-formats-test-pool-1-thread-9.log" substituted for "target/bio-formats-test-${threadName}.log" [testng] 03:29:31,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2026-07-06_03-29-31.log] [testng] 03:29:31,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fab3fe6 - End of configuration. [testng] [2026-07-06 03:29:32,876] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/qa-4206/1b-1.nd2: [testng] 03:29:32,876 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@406db15e - value "logfile-pool-1-thread-8" substituted for "logfile-${threadName}" [testng] 03:29:32,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:29:32,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:32,877 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@406db15e - value "target/bio-formats-test-pool-1-thread-8.log" substituted for "target/bio-formats-test-${threadName}.log" [testng] 03:29:32,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2026-07-06_03-29-32.log] [testng] 03:29:32,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@150bb65 - End of configuration. [testng] [2026-07-06 03:29:33,164] [pool-1-thread-7] Initializing /mnt/bioformats-data/curated/nd2/imagesc-76438/Slide2-20-2_Region0003_ChannelBrightfield_Seq0013.nd2: [testng] 03:29:33,165 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@532138 - value "logfile-pool-1-thread-7" substituted for "logfile-${threadName}" [testng] 03:29:33,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:29:33,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:33,165 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@532138 - value "target/bio-formats-test-pool-1-thread-7.log" substituted for "target/bio-formats-test-${threadName}.log" [testng] 03:29:33,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2026-07-06_03-29-33.log] [testng] 03:29:33,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@416e2b03 - End of configuration. [testng] [2026-07-06 03:29:35,653] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/jonas_nd2Test/Exception_2.nd2: [testng] 03:29:35,653 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@3c0084d2 - value "logfile-pool-1-thread-6" substituted for "logfile-${threadName}" [testng] 03:29:35,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:29:35,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:35,653 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@3c0084d2 - value "target/bio-formats-test-pool-1-thread-6.log" substituted for "target/bio-formats-test-${threadName}.log" [testng] 03:29:35,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2026-07-06_03-29-35.log] [testng] 03:29:35,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d3d8ee9 - End of configuration. [testng] [2026-07-06 03:29:35,916] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/venu/N202-5 20x2.nd2: [testng] 03:29:35,916 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@5e12e4d6 - value "logfile-pool-1-thread-5" substituted for "logfile-${threadName}" [testng] 03:29:35,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:29:35,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:35,917 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@5e12e4d6 - value "target/bio-formats-test-pool-1-thread-5.log" substituted for "target/bio-formats-test-${threadName}.log" [testng] 03:29:35,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2026-07-06_03-29-35.log] [testng] 03:29:35,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f2feeed - End of configuration. [testng] [2026-07-06 03:29:36,116] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/qa-29634/20201007_2_OCT4DBD-Halo_PA64625nM_1kframe_tail_7ms_40pert_008.nd2: [testng] 03:29:36,116 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@6815f84a - value "logfile-pool-1-thread-4" substituted for "logfile-${threadName}" [testng] 03:29:36,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:29:36,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:36,116 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@6815f84a - value "target/bio-formats-test-pool-1-thread-4.log" substituted for "target/bio-formats-test-${threadName}.log" [testng] 03:29:36,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2026-07-06_03-29-36.log] [testng] 03:29:36,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2928f271 - End of configuration. [testng] [2026-07-06 03:29:36,213] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/imagesc-76438/Slide2-20-1_Region0001_ChannelBrightfield_Seq0003.nd2: [testng] 03:29:36,222 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@15e16bf3 - value "logfile-pool-1-thread-3" substituted for "logfile-${threadName}" [testng] 03:29:36,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:29:36,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:36,222 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@15e16bf3 - value "target/bio-formats-test-pool-1-thread-3.log" substituted for "target/bio-formats-test-${threadName}.log" [testng] 03:29:36,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2026-07-06_03-29-36.log] [testng] 03:29:36,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54dc61c8 - End of configuration. [testng] [2026-07-06 03:29:40,531] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/dan/120109_test.nd2: [testng] 03:29:40,531 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@1d3ff09c - value "logfile-pool-1-thread-2" substituted for "logfile-${threadName}" [testng] 03:29:40,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:29:40,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:29:40,532 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@1d3ff09c - value "target/bio-formats-test-pool-1-thread-2.log" substituted for "target/bio-formats-test-${threadName}.log" [testng] 03:29:40,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2026-07-06_03-29-40.log] [testng] 03:29:40,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c02faa7 - End of configuration. [testng] [2026-07-06 03:29:45,026] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/jennet/2D001_crop.nd2: [testng] [2026-07-06 03:29:45,205] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/qa-7906/2591A1.jp2: [testng] [2026-07-06 03:29:45,501] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-15493140/19825_Cropped.nd2: [testng] [2026-07-06 03:29:46,104] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/strand/Serie040.nd2: [testng] [2026-07-06 03:29:46,733] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/unknown_fiji_upload/Day_2_A4_10x_Fluor_Z_Stack.nd2: [testng] [2026-07-06 03:29:46,842] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/header_test2.nd2: [testng] [2026-07-06 03:29:48,969] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/venu/N202-7 20x.nd2: [testng] [2026-07-06 03:29:49,633] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/multipoint.nd2: [testng] [2026-07-06 03:29:51,265] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-15046688/N2_file_bugged_reconstructed-version.nd2: [testng] [2026-07-06 03:29:52,683] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/kevin/100&210nm_coat_1.nd2: [testng] [2026-07-06 03:29:54,174] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/dallas/150609_m597_ut8.nd2: [testng] [2026-07-06 03:29:54,844] [pool-1-thread-4] ImageNames: FAILED (Series 0 (got 'N2_file_bugged_reconstructed-version.nd2 1A', expected 'N2_file_bugged_reconstructed-version.nd2 (series 1)')) [testng] [2026-07-06 03:29:56,273] [pool-1-thread-4] testUnflattenedImageNames: FAILED (Series 0 (got 'N2_file_bugged_reconstructed-version.nd2 1A', expected 'N2_file_bugged_reconstructed-version.nd2 (series 1)' or 'null')) [testng] [2026-07-06 03:29:56,651] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-15046688/N2_file_bugged_raw-version.nd2: [testng] [2026-07-06 03:29:57,508] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/bernhard/962_xy1.nd2: [testng] [2026-07-06 03:29:59,456] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/josh/072007h.nd2: [testng] [2026-07-06 03:30:00,841] [pool-1-thread-5] ImageNames: FAILED (Series 0 (got 'N2_file_bugged_raw-version.nd2 1A', expected 'N2_file_bugged_raw-version.nd2 (series 1)')) [testng] [2026-07-06 03:30:01,132] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/kaustav/cell field2.nd2: [testng] [2026-07-06 03:30:03,925] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/mariana/Captured 1.nd2: [testng] [2026-07-06 03:30:06,347] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/old_cells_02.nd2: [testng] [2026-07-06 03:30:08,341] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/imagesc-48360/error.nd2: [testng] [2026-07-06 03:30:17,389] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/MeOh_high_fluo_011.nd2: [testng] [2026-07-06 03:30:20,826] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-15046688/N1_file_bugged_reconstructed-version.nd2: [testng] [2026-07-06 03:30:23,215] [pool-1-thread-6] ImageNames: FAILED (Series 0 (got 'N1_file_bugged_reconstructed-version.nd2 N3A', expected 'N1_file_bugged_reconstructed-version.nd2 (series 1)')) [testng] [2026-07-06 03:30:24,360] [pool-1-thread-6] testUnflattenedImageNames: FAILED (Series 0 (got 'N1_file_bugged_reconstructed-version.nd2 N3A', expected 'N1_file_bugged_reconstructed-version.nd2 (series 1)' or 'null')) [testng] [2026-07-06 03:30:25,335] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/aryeh/BY_GFP-Mup1_mCHERRY-VPH1_10-7-2012_Meytal-Waiss_XYZT_GOOD.nd2: [testng] [2026-07-06 03:30:25,477] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/qa-7983/control_test_200314001.nd2: [testng] [2026-07-06 03:30:25,879] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/2112-2265.nd2: [testng] [2026-07-06 03:30:28,277] [pool-1-thread-5] testUnflattenedImageNames: FAILED (Series 0 (got 'N2_file_bugged_raw-version.nd2 1A', expected 'N2_file_bugged_raw-version.nd2 (series 1)' or 'null')) [testng] [2026-07-06 03:30:28,504] [pool-1-thread-6] ImageNames: FAILED (Series 0 (got 'control_test_200314001.nd2 #1', expected 'control_test_200314001.nd2 (series 1)')) [testng] [2026-07-06 03:30:29,436] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/michael/opens_skewed.nd2: [testng] [2026-07-06 03:30:31,358] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-15046688/N3_file_nobug_raw-version.nd2: [testng] [2026-07-06 03:30:32,739] [pool-1-thread-6] testUnflattenedImageNames: FAILED (Series 0 (got 'control_test_200314001.nd2 #1', expected 'control_test_200314001.nd2 (series 1)' or 'null')) [testng] [2026-07-06 03:30:34,245] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/stephen/Cody_Temp_Copy_crop.tif: [testng] [2026-07-06 03:30:35,066] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/imagesc-76438/FirstFileUsed_Slide2-20-1_ChannelBrightfield_Seq0001.nd2: [testng] [2026-07-06 03:30:36,876] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/plaissue/4channel_Zseries_2XYpoints_withROIandBinaryLayer.nd2: [testng] [2026-07-06 03:30:39,387] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/public/karl/sample_image.nd2: [testng] [2026-07-06 03:30:40,764] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/kevin/test1.nd2: [testng] [2026-07-06 03:30:42,015] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/colin/20110729_beads_001.nd2: [testng] [2026-07-06 03:30:43,605] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/qa-27289/ysp010pH4mVsLib2V2_1-1.nd2: [testng] [2026-07-06 03:30:43,727] [pool-1-thread-5] ImageNames: FAILED (Series 0 (got 'N3_file_nobug_raw-version.nd2 N1', expected 'N3_file_nobug_raw-version.nd2 (series 01)')) [testng] [2026-07-06 03:30:50,010] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/qa-29006/Voltron_Test004.nd2: [testng] [2026-07-06 03:30:50,384] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/ylva/FRAP1.nd2: [testng] [2026-07-06 03:30:50,458] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/stefanie/nd27.nd2: [testng] [2026-07-06 03:30:51,542] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/qa-9193/60x oil line scan 1 airy mono.nd2: [testng] [2026-07-06 03:30:51,758] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/michael/50um_004 skewed.nd2: [testng] [2026-07-06 03:30:52,625] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/qa-29035/Seq0000.nd2: [testng] [2026-07-06 03:30:53,909] [pool-1-thread-1] ImageNames: FAILED (Series 0 (got 'Seq0000.nd2 B06_0000', expected 'Seq0000.nd2 (series 01)')) [testng] [2026-07-06 03:30:55,647] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/yarden/KH2_Well1_4x.nd2: [testng] [2026-07-06 03:30:56,308] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/JJ1473_control_24h/JJ1473_conrol_24h_02.nd2: [testng] [2026-07-06 03:30:56,815] [pool-1-thread-1] testUnflattenedImageNames: FAILED (Series 0 (got 'Seq0000.nd2 B06_0000', expected 'Seq0000.nd2 (series 01)' or 'null')) [testng] [2026-07-06 03:30:57,936] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/venu/nd-two_channel-3.nd2: [testng] [2026-07-06 03:30:59,603] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/venu/1_140508,control.nd2: [testng] [2026-07-06 03:31:03,287] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/dan-dickinson/141_mChCtrl_002.nd2: [testng] [2026-07-06 03:31:03,816] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/imagesc-76438/Slide2-20-1_Region0000_ChannelBrightfield_Seq0002.nd2: [testng] [2026-07-06 03:31:12,427] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/public/imagesc-92810/Test_OMERO_nd2/correct/WellA02_ChannelBrightfield,Cy3 SD_Seq0001.nd2: [testng] [2026-07-06 03:31:13,659] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/gh-3838/small_test.nd2: [testng] [2026-07-06 03:31:14,356] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/katherina/120312_488HP_Convallaria nueva - C=1.tif: [testng] [2026-07-06 03:31:14,966] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-14893791/C3_N01Ato5_nucleo-trans_div3_mSG_b2s_200ms_30%_Reconstructed.nd2: [testng] [2026-07-06 03:31:15,904] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/gh-3667/neuron1.nd2: [testng] [2026-07-06 03:31:20,552] [pool-1-thread-6] ImageNames: FAILED (Series 0 (got 'C3_N01Ato5_nucleo-trans_div3_mSG_b2s_200ms_30%_Reconstructed.nd2 N1A', expected 'C3_N01Ato5_nucleo-trans_div3_mSG_b2s_200ms_30%_Reconstructed.nd2 (series 01)')) [testng] [2026-07-06 03:31:20,918] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/matt/Final merge.nd2: [testng] [2026-07-06 03:31:21,346] [pool-1-thread-8] ImageNames: FAILED (Series 0 (got 'neuron1.nd2 A1', expected 'neuron1.nd2 (series 1)')) [testng] [2026-07-06 03:31:22,431] [pool-1-thread-5] testUnflattenedImageNames: FAILED (Series 0 (got 'N3_file_nobug_raw-version.nd2 N1', expected 'N3_file_nobug_raw-version.nd2 (series 01)' or 'null')) [testng] [2026-07-06 03:31:22,648] [pool-1-thread-6] testUnflattenedImageNames: FAILED (Series 0 (got 'C3_N01Ato5_nucleo-trans_div3_mSG_b2s_200ms_30%_Reconstructed.nd2 N1A', expected 'C3_N01Ato5_nucleo-trans_div3_mSG_b2s_200ms_30%_Reconstructed.nd2 (series 01)' or 'null')) [testng] [2026-07-06 03:31:23,546] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/qa-7906/2591B1.jp2: [testng] [2026-07-06 03:31:24,421] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/brian/MDCK002.nd2: [testng] [2026-07-06 03:31:25,571] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/michael/MCammer Nikon file that wont open.nd2: [testng] [2026-07-06 03:31:25,931] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-15046688/N4_file_nobug_raw-version.nd2: [testng] [2026-07-06 03:31:27,270] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/strand/Reconstructed ND acquisition1.nd2: [testng] [2026-07-06 03:31:28,012] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/pete/psf_bead_theoretical.nd2: [testng] [2026-07-06 03:31:28,685] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-15046688/N1_file_bugged_raw-version.nd2: [testng] [2026-07-06 03:31:30,951] [pool-1-thread-8] testUnflattenedImageNames: FAILED (Series 0 (got 'neuron1.nd2 A1', expected 'neuron1.nd2 (series 1)' or 'null')) [testng] [2026-07-06 03:31:32,012] [pool-1-thread-4] ImageNames: FAILED (Series 0 (got 'N1_file_bugged_raw-version.nd2 N3A', expected 'N1_file_bugged_raw-version.nd2 (series 1)')) [testng] [2026-07-06 03:31:32,053] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/hallie/RNAi Plate 4.nd2: [testng] [2026-07-06 03:31:32,381] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/john/M900117_CBP11555_C264M2_GAST_T1_s1.nd2: [testng] [2026-07-06 03:31:34,202] [pool-1-thread-5] ImageNames: FAILED (Series 0 (got 'N4_file_nobug_raw-version.nd2 N1A', expected 'N4_file_nobug_raw-version.nd2 (series 01)')) [testng] [2026-07-06 03:31:41,650] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/qa-7534/130606_JCC719_003.nd2: [testng] [2026-07-06 03:31:50,533] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/kevin/100nm_coat_1.nd2: [testng] [2026-07-06 03:31:51,702] [pool-1-thread-7] Initializing /mnt/bioformats-data/curated/nd2/qa-10370/example_JPIKE.nd2: [testng] [2026-07-06 03:31:52,755] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/stefanie/nd026_xy1.nd2: [testng] [2026-07-06 03:31:54,149] [pool-1-thread-4] testUnflattenedImageNames: FAILED (Series 0 (got 'N1_file_bugged_raw-version.nd2 N3A', expected 'N1_file_bugged_raw-version.nd2 (series 1)' or 'null')) [testng] [2026-07-06 03:31:55,177] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/512c/cag_p5_simgc_2511_70ms22s_crop.nd2: [testng] [2026-07-06 03:31:55,510] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/pierre/G.nd2: [testng] [2026-07-06 03:31:57,162] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/ye-chen/LOCI_YeChen_Swinburne.nd2: [testng] [2026-07-06 03:31:59,337] [pool-1-thread-7] Initializing /mnt/bioformats-data/curated/nd2/michael/test_MCammer.nd2: [testng] [2026-07-06 03:32:00,037] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-15046688/N3_file_nobug_reconstructed-version.nd2: [testng] [2026-07-06 03:32:00,346] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/header_test1.nd2: [testng] [2026-07-06 03:32:01,039] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/qa-7536/SampleND2-ChrisL.nd2: [testng] [2026-07-06 03:32:02,980] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/venu/nd-three_channel-3.nd2: [testng] [2026-07-06 03:32:04,903] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/helene/new_version_problem.nd2: [testng] [2026-07-06 03:32:06,382] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/rehan/P128.nd2: [testng] [2026-07-06 03:32:07,631] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/qa-7535/JJ_Controls_D_004.nd2: [testng] [2026-07-06 03:32:09,303] [pool-1-thread-2] ImageNames: FAILED (Series 0 (got 'N3_file_nobug_reconstructed-version.nd2 N1', expected 'N3_file_nobug_reconstructed-version.nd2 (series 01)')) [testng] [2026-07-06 03:32:09,379] [pool-1-thread-7] Initializing /mnt/bioformats-data/curated/nd2/tom/1024x1024.nd2: [testng] [2026-07-06 03:32:11,991] [pool-1-thread-7] Initializing /mnt/bioformats-data/curated/nd2/kyle-vrtis/180627 1e Cas9 GINS collapse lag lag.nd2: [testng] [2026-07-06 03:32:13,387] [pool-1-thread-2] testUnflattenedImageNames: FAILED (Series 0 (got 'N3_file_nobug_reconstructed-version.nd2 N1', expected 'N3_file_nobug_reconstructed-version.nd2 (series 01)' or 'null')) [testng] [2026-07-06 03:32:16,039] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/tom/512x512x11 1um step.nd2: [testng] [2026-07-06 03:32:16,510] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/chris/MIX 1 FITC 200MS.nd2: [testng] [2026-07-06 03:32:16,933] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/stephen/Cody_Temp_Copy_crop.nd2: [testng] [2026-07-06 03:32:17,280] [pool-1-thread-5] testUnflattenedImageNames: FAILED (Series 0 (got 'N4_file_nobug_raw-version.nd2 N1A', expected 'N4_file_nobug_raw-version.nd2 (series 01)' or 'null')) [testng] [2026-07-06 03:32:17,649] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/venu/four_160807_control cells_4D.tif: [testng] [2026-07-06 03:32:19,449] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/henry/large image.nd2: [testng] [2026-07-06 03:32:19,607] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/venu/N202.1A+7 2h.nd2: [testng] [2026-07-06 03:32:19,890] [pool-1-thread-7] ImageNames: FAILED (Series 0 (got '180627 1e Cas9 GINS collapse lag lag.nd2 A1', expected '180627 1e Cas9 GINS collapse lag lag.nd2 (series 01)')) [testng] [2026-07-06 03:32:20,296] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/josh/CGE1.nd2: [testng] [2026-07-06 03:32:20,545] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/imagesc-80198/20230403_CSUW1B_25XSilObj_PSF.nd2: [testng] [2026-07-06 03:32:21,476] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/multicolorTest.nd2: [testng] [2026-07-06 03:32:24,796] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/rehan/P128 wt pg bouton.ics: [testng] [2026-07-06 03:32:25,372] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/jcb/201101064/Fig 8B imp beta alone-MaxIP.nd2: [testng] [2026-07-06 03:32:25,996] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/michael/opened skewed - C=1.tif: [testng] [2026-07-06 03:32:27,032] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/pki/20120730 RGB 293-S1PR1-eGFP 8 compound 24hr v1.nd2: [testng] [2026-07-06 03:32:28,643] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/tiao/WellC03_Seq0000.nd2: [testng] [2026-07-06 03:32:30,546] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/venu/seven_160807_control cells_4D.tif: [testng] [2026-07-06 03:32:33,027] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/richard/KitWv#67.avi: [testng] [2026-07-06 03:32:35,127] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/kyle/F301.nd2: [testng] [2026-07-06 03:32:35,348] [pool-1-thread-7] testUnflattenedImageNames: FAILED (Series 0 (got '180627 1e Cas9 GINS collapse lag lag.nd2 A1', expected '180627 1e Cas9 GINS collapse lag lag.nd2 (series 01)' or 'null')) [testng] [2026-07-06 03:32:36,164] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/qa-17099/upSIAPdownNT002.nd2: [testng] [2026-07-06 03:32:39,256] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/qa-7799/Patient 67 from 20130812.nd2: [testng] [2026-07-06 03:32:39,763] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/yanmei/snapcells-vps1002.nd2: [testng] [2026-07-06 03:32:41,235] [pool-1-thread-7] Initializing /mnt/bioformats-data/curated/nd2/venu/nd-three_channel-0.nd2: [testng] [2026-07-06 03:32:42,397] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/venu/nd-three_channel-2.nd2: [testng] [2026-07-06 03:32:44,083] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/qa-31330/Hotel_02-Slot_01-Slide_01-Region_1_Stitched.nd2: [testng] [2026-07-06 03:32:46,607] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/imagesc-76438/Slide2-20-2_ChannelBrightfield_Seq0009.nd2: [testng] [2026-07-06 03:32:47,723] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-16921650/B08.nd2: [testng] [2026-07-06 03:32:48,721] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/imagesc-104299/dan-iss-stitch_000_rm05_gas1-combined_final.nd2: [testng] [2026-07-06 03:32:49,432] [pool-1-thread-1] ImageNames: FAILED (Series 0 (got 'B08.nd2 c08', expected 'B08.nd2 (series 1)')) [testng] [2026-07-06 03:32:50,546] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/512c/wtf_DIC.nd2: [testng] [2026-07-06 03:32:51,030] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/4_con_2_1_cot002.nd2: [testng] [2026-07-06 03:33:00,480] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/3.nd2: [testng] [2026-07-06 03:33:20,410] [pool-1-thread-8] ImageNames: FAILED (Series 0 (got 'RNAi Plate 4.nd2 A01', expected 'RNAi Plate 4.nd2 (series 01)')) [testng] [2026-07-06 03:33:21,131] [pool-1-thread-1] testUnflattenedImageNames: FAILED (Series 0 (got 'B08.nd2 c08', expected 'B08.nd2 (series 1)' or 'null')) [testng] [2026-07-06 03:33:22,495] [pool-1-thread-7] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/divisionByZero/290110.tranMgc005cr.nd2: [testng] [2026-07-06 03:33:24,380] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/qa-5042/8xyPoints_3channels_00_30m235_all8xyIdentified.nd2: [testng] [2026-07-06 03:33:25,062] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/venu/nd-two_channel-2.nd2: [testng] [2026-07-06 03:33:31,082] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/venu/three_160807_control cells_4D.tif: [testng] [2026-07-06 03:33:33,163] [pool-1-thread-7] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-10277961/MRAP1 KO DN_10X03.nd2: [testng] [2026-07-06 03:33:33,368] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/guillaume/Lig_drugs051607.nd2: [testng] [2026-07-06 03:33:34,141] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/qa-10380/271120.nd2: [testng] [2026-07-06 03:33:40,087] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/michael/metadata only reported for last channel.nd2: [testng] [2026-07-06 03:33:40,670] [pool-1-thread-7] Initializing /mnt/bioformats-data/curated/nd2/plaissue/4channel_Zseries.nd2: [testng] [2026-07-06 03:33:42,722] [pool-1-thread-7] Initializing /mnt/bioformats-data/curated/nd2/venu/six_160807_control cells_4D.tif: [testng] [2026-07-06 03:33:44,805] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/qa-4196/120123 10h timelapse after incubator set up 1xy 1t.nd2: [testng] [2026-07-06 03:33:46,962] [pool-1-thread-7] Initializing /mnt/bioformats-data/curated/nd2/yarden/Session26_Well1_10x.nd2: [testng] [2026-07-06 03:33:54,133] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/venu/nd-three_channel-5.nd2: [testng] [2026-07-06 03:34:02,404] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/colin/20110729_beads_001_xy1.nd2: [testng] [2026-07-06 03:34:03,196] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/michael/stopped-acquisition/ND2 file does not open MCammer.nd2: [testng] [2026-07-06 03:34:07,641] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/richard/KitWv67-72.nd2: [testng] [2026-07-06 03:34:11,788] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/bassem/A PSF1.nd2: [testng] [2026-07-06 03:34:11,894] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/qa-10100/20141002_V019+AFP1052n3-005.nd2: [testng] [2026-07-06 03:34:13,086] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/michael/MCammer Nikon file opens in wrong order.nd2: [testng] [2026-07-06 03:34:17,474] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/qa-28060/20191023-htirf-888.nd2: [testng] [2026-07-06 03:34:19,976] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/yanmei/snapcells-vps2.nd2: [testng] [2026-07-06 03:34:23,465] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/jonas_nd2Test/Exception9_e3.nd2: [testng] [2026-07-06 03:34:25,042] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/qa-4969/image.nd2: [testng] [2026-07-06 03:34:25,681] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/richard/Nf1#49-#54.nd2: [testng] [2026-07-06 03:34:34,043] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/por003.nd2: [testng] [2026-07-06 03:34:34,607] [pool-1-thread-3] ImageNames: FAILED (Series 0 (got 'Nf1#49-#54.nd2 #1', expected 'Nf1#49-#54.nd2 (series 1)')) [testng] [2026-07-06 03:34:35,356] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-16628927/Slide4-4_Region0001_Channel20xDAPI,20xCy3_Seq0027.nd2: [testng] [2026-07-06 03:34:36,164] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/kevin/test3.nd2: [testng] [2026-07-06 03:34:37,840] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/qa-7303/CTR011.nd2: [testng] [2026-07-06 03:34:39,103] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/christophe/A1N1_Veh_2D_B4S.nd2: [testng] [2026-07-06 03:35:24,234] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/stefanie/200307_necl2.nd2: [testng] [2026-07-06 03:35:59,559] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/jcb/201101064/Fig 8B imp beta-BPN MaxIP.nd2: [testng] [2026-07-06 03:36:00,163] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/qa-4973/CX3+MCh Long Ova(4Henry)002.nd2: [testng] [2026-07-06 03:36:01,719] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/qa-28066/20191203-htirf-sona.nd2: [testng] [2026-07-06 03:36:04,398] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/christian/missing-dimensions-test.nd2: [testng] [2026-07-06 03:36:05,379] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/qa-4836/MGH media d10 large image_crop.nd2: [testng] [2026-07-06 03:36:05,700] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/Time sequence 24.nd2: [testng] [2026-07-06 03:36:07,542] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/stephen/LOCI_screen_dump.jpg: [testng] [2026-07-06 03:36:08,332] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/venu/N202-15 20x001.nd2: [testng] [2026-07-06 03:36:11,775] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/bernhard/962.nd2: [testng] [2026-07-06 03:36:17,498] [pool-1-thread-3] testUnflattenedImageNames: FAILED (Series 0 (got 'Nf1#49-#54.nd2 #1', expected 'Nf1#49-#54.nd2 (series 1)' or 'null')) [testng] [2026-07-06 03:36:21,483] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/venu/nd-three_channel-6.nd2: [testng] [2026-07-06 03:36:28,961] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/kyle/B204.nd2: [testng] [2026-07-06 03:36:41,172] [pool-1-thread-2] Initializing /mnt/bioformats-data/curated/nd2/bioformats2raw-184/Round1-Slot_01-Slide_01-Region_1-Stitched-Focused.nd2: [testng] [2026-07-06 03:43:53,070] [pool-1-thread-8] testUnflattenedImageNames: FAILED (Series 0 (got 'RNAi Plate 4.nd2 A01', expected 'RNAi Plate 4.nd2 (series 01)' or 'null')) [testng] [2026-07-06 03:43:59,143] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/michael/6timepoints 4channels.nd2: [testng] [2026-07-06 03:44:03,213] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/nadya/Capture1.PNG: [testng] [2026-07-06 03:44:04,268] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/qa-7303/CTR_012.nd2: [testng] [2026-07-06 03:44:10,344] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/MeOh_high_fluo_007.nd2: [testng] [2026-07-06 03:44:22,321] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/gaurav/A1.nd2: [testng] [2026-07-06 03:44:22,766] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/guillaume/clones082908.nd2: [testng] [2026-07-06 03:44:27,973] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/gh-3565/example_metadata001.nd2: [testng] [2026-07-06 03:44:28,594] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/venu/eight_160807_control cells_4D.tif: [testng] [2026-07-06 03:44:29,792] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/colin/20110729_beads_001_xy2.nd2: [testng] [2026-07-06 03:44:30,728] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/michael/frap0041 00X 1Xeyepiece 15sec Cy5 ICAM TIRF.nd2: [testng] [2026-07-06 03:44:34,419] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/fiji-655/01.nd2: [testng] [2026-07-06 03:44:36,707] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/MeOh_high_fluo_003.nd2: [testng] [2026-07-06 03:44:38,995] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/chris/228 and 340.nd2: [testng] [2026-07-06 03:44:40,521] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/movieSize/JJ_RNAi_hmr-1_001_CropCyan.nd2: [testng] [2026-07-06 03:44:42,977] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/richard/15ug.nd2: [testng] [2026-07-06 03:44:44,187] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/qa-17785/spc2493.nd2: [testng] [2026-07-06 03:44:46,119] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/imagesc-76438/Slide2-20-2_Region0001_ChannelBrightfield_Seq0011.nd2: [testng] [2026-07-06 03:45:16,897] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/leon/WellA1_Seq0000.nd2: [testng] [2026-07-06 03:45:17,207] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/sara/Ex9 ALADIN WT KO KI 31_07_2013.avi: [testng] [2026-07-06 03:45:18,942] [pool-1-thread-4] ImageNames: FAILED (Series 0 (got 'WellA1_Seq0000.nd2 A1_0000', expected 'WellA1_Seq0000.nd2 (series 01)')) [testng] [2026-07-06 03:45:20,197] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/karsten/100720104_TestglasSchott_MM63_C10h.nd2: [testng] [2026-07-06 03:45:22,033] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/but3_cont2002.nd2: [testng] [2026-07-06 03:45:24,941] [pool-1-thread-4] testUnflattenedImageNames: FAILED (Series 0 (got 'WellA1_Seq0000.nd2 A1_0000', expected 'WellA1_Seq0000.nd2 (series 01)' or 'null')) [testng] [2026-07-06 03:45:26,257] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/helene/testseries1.nd2: [testng] [2026-07-06 03:45:28,873] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/venu/nd-three_channel-1.nd2: [testng] [2026-07-06 03:45:34,937] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/plaissue/4channel_Zseries_withROIlayer.nd2: [testng] [2026-07-06 03:45:36,110] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/JJ1473_control_24h/JJ1473_control_24h_03.nd2: [testng] [2026-07-06 03:45:37,473] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/4_2_1_cont_NoMR001.nd2: [testng] [2026-07-06 03:45:44,137] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/jonas_nd2Test/Exception61.nd2: [testng] [2026-07-06 03:45:47,795] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/cameron/CamND2.nd2: [testng] [2026-07-06 03:45:49,277] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/qa-29438/chip1_channel1_each-pixel.nd2: [testng] [2026-07-06 03:45:52,174] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/qa-4305/22492726_Figure 5_B_NA_3.nd2: [testng] [2026-07-06 03:46:00,885] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/venu/nd-three_channel-4.nd2: [testng] [2026-07-06 03:46:09,112] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/512c/nikonTest_two.nd2: [testng] [2026-07-06 03:46:16,759] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-17186598/Experiment_0001.nd2: [testng] [2026-07-06 03:46:19,686] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/kevin/DD100liposomes_1.nd2: [testng] [2026-07-06 03:46:21,389] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/2.nd2: [testng] [2026-07-06 03:46:29,855] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/qa-7908/020514 SH003.nd2: [testng] [2026-07-06 03:46:30,120] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/qa-7572/cells.nd2: [testng] [2026-07-06 03:46:35,460] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/michael/tiling_problem_mcammer.nd2: [testng] [2026-07-06 03:46:40,267] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/b16_pdtB+y50__crop.nd2: [testng] [2026-07-06 03:46:52,792] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/venu/N202-11 20x20.nd2: [testng] [2026-07-06 03:46:58,641] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-15493140/169_Original.nd2: [testng] [2026-07-06 03:46:59,956] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/gh-3667/WellA01_PointA01_0000_ChannelFITC-Multi,TRITC-Multi,Cy5-Multi_Seq0000.nd2: [testng] [2026-07-06 03:47:06,573] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/venu/nd-two_channel-1.nd2: [testng] [2026-07-06 03:47:13,189] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/qa-5042/8xyPoints_3channels_00_30m001_latelyOnly7xyIdentified.nd2: [testng] [2026-07-06 03:47:14,300] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/michael/TEMPmcammer.nd2: [testng] [2026-07-06 03:47:16,684] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/qa-17695/sample.nd2: [testng] [2026-07-06 03:47:20,351] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/qa-7906/2591A.jp2: [testng] [2026-07-06 03:47:25,672] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/kevin/test2.nd2: [testng] [2026-07-06 03:47:27,189] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/control002.nd2: [testng] [2026-07-06 03:47:29,218] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/rfp_h2a_cells_02.nd2: [testng] [2026-07-06 03:48:11,933] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/venu/two_160807_control cells_4D.tif: [testng] [2026-07-06 03:48:15,777] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/kevin/100nm_1.nd2: [testng] [2026-07-06 03:48:36,122] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-15493140/169_Cropped.nd2: [testng] [2026-07-06 03:48:38,649] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/michael/mcammer BUT THIS FILE OPENS FINE.nd2: [testng] [2026-07-06 03:48:53,739] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/uli/2012_04_19_CHOegfr_03.nd2: [testng] [2026-07-06 03:48:54,218] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/david/NDSequence013.nd2: [testng] [2026-07-06 03:48:54,976] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/david/_t4h f.nd2: [testng] [2026-07-06 03:48:58,057] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/stefanie/nd026_xy0.nd2: [testng] [2026-07-06 03:48:59,399] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/public/imagesc-92810/Test_OMERO_nd2/not_correct/WellA03_ChannelBrightfield,Cy3 SD_Seq0002.nd2: [testng] [2026-07-06 03:49:47,622] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/stefanie/nd026_xy2.nd2: [testng] [2026-07-06 03:49:48,378] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/venu/five_160807_control cells_4D.tif: [testng] [2026-07-06 03:49:48,639] [pool-1-thread-6] Initializing /mnt/bioformats-data/curated/nd2/damir/Plate000_Well1_Seq0000.nd2: [testng] [2026-07-06 03:49:53,481] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/b16_14_12.nd2: [testng] [2026-07-06 03:49:58,378] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/qa-29043/Actin-Polymerization-10min-2s.nd2: [testng] [2026-07-06 03:50:01,616] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/venu/nd-two_channel-0.nd2: [testng] [2026-07-06 03:50:07,834] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/qa-29424/KDV1679_chip1_channel1_3dyesEndpoint_16x.nd2: [testng] [2026-07-06 03:50:08,354] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/qa-7906/2591B.jp2: [testng] [2026-07-06 03:50:13,381] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/katherina/120312_488HP_Convallaria nueva.nd2: [testng] [2026-07-06 03:50:17,178] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/michael/3 stage positions 2 ch opens out of order with LOCI .nd2: [testng] [2026-07-06 03:50:22,214] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/plaissue/2channel-Zstack-withBinaryLayer.nd2: [testng] [2026-07-06 03:50:25,355] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/imagesc-112396/823_Clarkia pulchella_16-1_DIC_SG.nd2: [testng] [2026-07-06 03:50:32,076] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/qa-9183/aaron_multi_positions.nd2: [testng] [2026-07-06 03:50:44,105] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/david/NDSequence012.nd2: [testng] [2026-07-06 03:50:46,909] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/but3_cont200-1.nd2: [testng] [2026-07-06 03:50:53,529] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/qa-11064/t1_mp8_z4_chOff_005.nd2: [testng] [2026-07-06 03:51:03,289] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/sarah/sarah_1011.nd2: [testng] [2026-07-06 03:51:08,538] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/100217_OD122_001.nd2: [testng] [2026-07-06 03:51:10,687] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-7439387/ns_blobtest2.0_20x_A2_far.nd2: [testng] [2026-07-06 03:51:16,432] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/michael/Opens ok with LOCI.nd2: [testng] [2026-07-06 03:51:17,600] [pool-1-thread-1] ImageNames: FAILED (Series 0 (got 'ns_blobtest2.0_20x_A2_far.nd2 A1 close', expected 'ns_blobtest2.0_20x_A2_far.nd2 (series 1)')) [testng] [2026-07-06 03:51:24,322] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/michael/opens_ok.nd2: [testng] [2026-07-06 03:51:27,846] [pool-1-thread-1] testUnflattenedImageNames: FAILED (Series 0 (got 'ns_blobtest2.0_20x_A2_far.nd2 A1 close', expected 'ns_blobtest2.0_20x_A2_far.nd2 (series 1)' or 'null')) [testng] [2026-07-06 03:51:30,118] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/gh-3761/ri2 colour image.nd2: [testng] [2026-07-06 03:51:42,794] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/jose/08_SO4_Fasc100_at_surface_w_average.nd2: [testng] [2026-07-06 03:51:50,677] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/stefanie/nd026_xy3.nd2: [testng] [2026-07-06 03:51:58,859] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-15579371/823_Clarkia pulchella_09-1_DIC_SG.nd2: [testng] [2026-07-06 03:51:59,734] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/qa-11064/t2_mp8_z4_ch3_.nd2: [testng] [2026-07-06 03:52:07,766] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/jcb/201101064/Fig 8B imp beta-BPM MaxIP.nd2: [testng] [2026-07-06 03:52:10,937] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/john/M900117_CBP11555_C264M2_SOL_CD31_s1.nd2: [testng] [2026-07-06 03:52:21,315] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/512c/wtf_alignment.nd2: [testng] [2026-07-06 03:52:24,731] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/qa-11064/t2_mp8_z4_ch3__channelsDeleted.nd2: [testng] [2026-07-06 03:52:31,668] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/512c/nikonTest_1.nd2: [testng] [2026-07-06 03:52:34,824] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/michael/opened skewed - C=0.tif: [testng] [2026-07-06 03:52:35,846] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/qa-7454/Dapi PFA Eukitt 1r 001.nd2: [testng] [2026-07-06 03:52:43,250] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/david/nc4r-la Ka004.nd2: [testng] [2026-07-06 03:52:43,799] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/qa-27812/Deconvolved_32Float.nd2: [testng] [2026-07-06 03:52:47,128] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/liang/2x2 bad.nd2: [testng] [2026-07-06 03:52:50,346] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/kevin/lipo100nmPEG_1.nd2: [testng] [2026-07-06 03:52:53,549] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-15046688/N4_file_nobug_reconstructed-version.nd2: [testng] [2026-07-06 03:53:01,700] [pool-1-thread-1] ImageNames: FAILED (Series 0 (got 'N4_file_nobug_reconstructed-version.nd2 N1A', expected 'N4_file_nobug_reconstructed-version.nd2 (series 01)')) [testng] [2026-07-06 03:53:05,777] [pool-1-thread-1] testUnflattenedImageNames: FAILED (Series 0 (got 'N4_file_nobug_reconstructed-version.nd2 N1A', expected 'N4_file_nobug_reconstructed-version.nd2 (series 01)' or 'null')) [testng] [2026-07-06 03:53:08,842] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/michael/opened skewed - C=2.tif: [testng] [2026-07-06 03:53:13,026] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/gh-2955/cluster.nd2: [testng] [2026-07-06 03:53:13,996] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/liang/1x4 good.nd2: [testng] [2026-07-06 03:53:16,047] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/qa-4958/556_t2.nd2: [testng] [2026-07-06 03:53:17,139] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/public/maxime/BF007.nd2: [testng] [2026-07-06 03:53:19,681] [pool-1-thread-1] Initializing /mnt/bioformats-data/curated/nd2/imagesc-108565/20250129_P301S_40AD_tile_60x015.nd2: [testng] [2026-07-06 03:53:22,139] [pool-1-thread-3] Initializing /mnt/bioformats-data/curated/nd2/public/aryeh/qa-9507/control003.nd2: [testng] [2026-07-06 03:53:34,947] [pool-1-thread-4] Initializing /mnt/bioformats-data/curated/nd2/sara/Ex9 ALADIN WT KO KI 31_07_2013.nd2: [testng] [2026-07-06 03:53:37,440] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/david/NDSequence011.nd2: [testng] [2026-07-06 03:53:46,900] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/public/jonas/movieSize/JJ_RNAi_hmr-1_001.nd2: [testng] [2026-07-06 03:53:50,329] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/christian/CW002_3_rfp.nd2: [testng] [2026-07-06 03:53:52,252] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/benjamin/B2.nd2: [testng] [2026-07-06 03:54:00,347] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/venu/nd-two_channel-4.nd2: [testng] [2026-07-06 03:54:10,421] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/barseno/r1008.nd2: [testng] [2026-07-06 03:54:11,615] [pool-1-thread-4] ImageNames: FAILED (Series 0 (got 'Ex9 ALADIN WT KO KI 31_07_2013.nd2 KI', expected 'Ex9 ALADIN WT KO KI 31_07_2013.nd2 (series 01)')) [testng] [2026-07-06 03:54:12,450] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-12734440/HE_002.nd2: [testng] [2026-07-06 03:54:53,236] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/public/zenodo-15493140/19825_Original.nd2: [testng] [2026-07-06 03:55:09,136] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/qa-4958/521_t1.nd2: [testng] [2026-07-06 03:55:12,870] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/michael/50um_001 correct.nd2: [testng] [2026-07-06 03:55:16,131] [pool-1-thread-9] Initializing /mnt/bioformats-data/curated/nd2/karsten/100720104_TestglasSchott_MM63_C16h_SYTO.nd2: [testng] [2026-07-06 03:55:18,682] [pool-1-thread-4] testUnflattenedImageNames: FAILED (Series 0 (got 'Ex9 ALADIN WT KO KI 31_07_2013.nd2 KI', expected 'Ex9 ALADIN WT KO KI 31_07_2013.nd2 (series 01)' or 'null')) [testng] [2026-07-06 03:55:21,683] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/jason/CapturedBF2.nd2: [testng] [2026-07-06 03:55:27,932] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/pki/15July2011 ImClone multiwell test file.nd2: [testng] [2026-07-06 03:55:32,173] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/qa-9207/n1e 570-wisp2 670-cdh6 -2(good 1-11)_xy1.nd2: [testng] [2026-07-06 03:55:33,642] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/kevin/sfeertjes 100 nm 10 000x 15p (1).nd2: [testng] [2026-07-06 03:55:35,914] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/qa-7535/RNAi_CLC-1_010_kymo1.nd2: [testng] [2026-07-06 03:55:36,221] [pool-1-thread-5] Initializing /mnt/bioformats-data/curated/nd2/marek/NIS4_fails_to_open_correctly.nd2: [testng] [2026-07-06 03:55:38,818] [pool-1-thread-8] Initializing /mnt/bioformats-data/curated/nd2/michael/10um skewed.nd2: [testng] [2026-07-06 04:03:21,255] [pool-1-thread-6] ImageNames: FAILED (Series 0 (got 'Plate000_Well1_Seq0000.nd2 1', expected 'Plate000_Well1_Seq0000.nd2 (series 001)')) [testng] [2026-07-06 04:13:02,564] [pool-1-thread-6] testUnflattenedImageNames: FAILED (Series 0 (got 'Plate000_Well1_Seq0000.nd2 1', expected 'Plate000_Well1_Seq0000.nd2 (series 001)' or 'null')) [testng] 04:42:55,954 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@24b83648 - value "logfile-main" substituted for "logfile-${threadName}" [testng] 04:42:55,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:42:55,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:42:55,955 |-INFO in ch.qos.logback.core.sift.AppenderFactoryUsingSiftModel$1@24b83648 - value "target/bio-formats-test-main.log" substituted for "target/bio-formats-test-${threadName}.log" [testng] 04:42:55,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2026-07-06_04-42-55.log] [testng] 04:42:55,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d0c2990 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 14787, Failures: 40, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed.